Swine MST Case Studies
1. Northeast Cape Fear River Contaminated by Hog Waste
Hog waste contamination in the Northeast Cape Fear River was detected by investigators from the Water Resources Research Institute of the University of North Carolina in water samples they collected in 2010.
Researchers point out that pollution from concentrated animal feeding operations (CAFOs) during and after large storms has been well documented in North Carolina. Contributors to water quality degradation in North Carolina rivers, estuaries, and groundwater supplies include chronic runoff and subsurface movement from sprayfields. However, no definitive investigation has been conducted to identify swine manure contamination as a source of chronic microbial pollution in watersheds. This led investigators to initiate an examination of the levels of swine manure contamination in waterways of hog farm areas by detecting and quantifying the 16S rRNA genes of hog-specific Bacteroides-Prevotella.
In order to monitor hog-specific fecal contamination in the Cape Fear River watershed, two molecular techniques were employed: T-RFLP (Terminal Restriction Fragment Length Polymorphism) and qPCR (Quantitative Polymerase Chain Reaction) of 16S rRNA genes in Bacteroides-Prevotella. TRFLP is a DNA fingerprinting method, which is used to compare the structural similarities of Bacteroides-Prevotella communities in hog lagoon wastes and water samples collected from 9 stations in two watersheds; the Black River and the Northeast Cape Fear River. The qPCR technique is used to quantify the levels of hog manure contamination in each water sample based on the copy numbers of hog specific Bacteroides-Prevotella 16S rRNA genes. In addition, fecal coliform bacteria counts and nutrient analyses have been conducted along with the molecular analysis.
In their 2011 progress report, investigators disclosed they completed Quantitative PCR assays of water samples collected bi-monthly from 5 sites in the Black River watershed and 4 locations in the Northeast Cape Fear River watershed. Investigators conducted multiple correlation analyses between the Q-PCR data and the water quality parameters monitored at the sampling stations.
According to investigators, the hog waste contamination in the Northeast Cape Fear River seemed to depend primarily on proximity of the sampling site from upstream hog related facilities. Sites furthest away from hog farms had the least amount of contamination compared to those directly downstream from a hog facility. On a seasonal basis, all but one site had a spike in hog waste contamination during May 2010. This is most likely a result from run-off or leaching from seasonal spraying of fields with lagoon waste. In contrast, the contamination in the Black River appears to be more related to the sampling location on the river as well as rainfall events. One site had the highest overall contamination in the Black River watershed. Even though the sampling station is not located in immediate proximity from any CAFOs, there are numerous CAFOs in its watershed (153). The contamination levels were also significantly correlated to rain events on the day of sampling.
Researchers contend that estimating the scales of swine manure contamination in streams, rivers and groundwater will allow development of proper and effective efforts to manage and remediate water quality in North Carolina.
Click for a copy of the Report and the 2011 Progress Report.